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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCNAB1Potassium voltage-gated channel Shaker-related subfamily A, beta member 1. (418 aa)    
Predicted Functional Partners:
NUP133
Nuclear pore complex protein Nup133 isoform X1.
   
 0.713
SEC13
Protein transport protein SEC13.
    
 0.708
NUP107
Nuclear pore complex protein Nup107.
   
 0.704
KCNG4
Potassium voltage-gated channel subfamily G member 4.
    
 0.688
SEH1L
Nucleoporin SEH1 isoform X1.
    
 0.663
NUP85
Nucleoporin 85.
    
 0.660
NUP98
Nuclear pore complex protein Nup98-Nup96-like.
    
 0.654
NCOA5
Nuclear receptor coactivator 5.
    
 0.654
KCNA6
Potassium voltage-gated channel Shaker-related subfamily A member 6.
   
 0.625
KCND2
Potassium voltage-gated channel Shal-related subfamily D member 2.
    
 0.625
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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