Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DHX36ATP-dependent RNA helicase DHX36. (983 aa)    
Predicted Functional Partners:
GPR149
Probable G-protein coupled receptor 149.
   
 0.840
MYD88
Myeloid differentiation primary response protein MyD88.
   
 0.783
DDX1
ATP-dependent RNA helicase DDX1.
   
 0.750
ITSN2
Intersectin-2 isoform X1.
   
 0.746
DDX41
Probable ATP-dependent RNA helicase DDX41.
   
 0.740
LOC107207100
ATP-dependent RNA helicase DDX21.
   
 0.710
DDX24
ATP-dependent RNA helicase DDX24/MAK5.
   
 0.700
DHX9
ATP-dependent RNA helicase A isoform X1.
   
 0.693
IRF7
LOW QUALITY PROTEIN: interferon regulatory factor 7.
     
 0.684
CWF19L1
CWF19-like protein 1 isoform X1.
   
 
 0.676
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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