NFKBID protein (Parus major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

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[Homology]

Score

NFKBID

NF-kappa-B inhibitor delta-like isoform X1. (461 aa)

Predicted Functional Partners:

CDC42BPA

0.655

LOC107211479

0.627

NFKB1

0.598

NFKB2

0.598

HLCS

0.593

ENSPMJP00000004579

0.528

REL

0.528

SETD6

0.520

ASB13

0.505

ASB14

0.495

Your Current Organism:

Parus major

NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB13	NFKBID	ENSPMJP00000017409	ENSPMJP00000008529	Ankyrin repeat and SOCS box protein 13.	NF-kappa-B inhibitor delta-like isoform X1.	0.505
ASB14	NFKBID	ENSPMJP00000016672	ENSPMJP00000008529	Ankyrin repeat and SOCS box protein 14 isoform X1.	NF-kappa-B inhibitor delta-like isoform X1.	0.495
CDC42BPA	HLCS	ENSPMJP00000014956	ENSPMJP00000012369	Serine/threonine-protein kinase MRCK alpha isoform X1.	Biotin---protein ligase.	0.601
CDC42BPA	LOC107211479	ENSPMJP00000014956	ENSPMJP00000026150	Serine/threonine-protein kinase MRCK alpha isoform X1.	Proline dehydrogenase 1, mitochondrial-like.	0.671
CDC42BPA	NFKBID	ENSPMJP00000014956	ENSPMJP00000008529	Serine/threonine-protein kinase MRCK alpha isoform X1.	NF-kappa-B inhibitor delta-like isoform X1.	0.655
ENSPMJP00000004579	NFKB1	ENSPMJP00000004579	ENSPMJP00000012673	annotation not available	Nuclear factor NF-kappa-B p105 subunit isoform X1.	0.828
ENSPMJP00000004579	NFKB2	ENSPMJP00000004579	ENSPMJP00000020897	annotation not available	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2.	0.828
ENSPMJP00000004579	NFKBID	ENSPMJP00000004579	ENSPMJP00000008529	annotation not available	NF-kappa-B inhibitor delta-like isoform X1.	0.528
ENSPMJP00000004579	SETD6	ENSPMJP00000004579	ENSPMJP00000019681	annotation not available	N-lysine methyltransferase SETD6 isoform X1.	0.852
HLCS	CDC42BPA	ENSPMJP00000012369	ENSPMJP00000014956	Biotin---protein ligase.	Serine/threonine-protein kinase MRCK alpha isoform X1.	0.601
HLCS	LOC107211479	ENSPMJP00000012369	ENSPMJP00000026150	Biotin---protein ligase.	Proline dehydrogenase 1, mitochondrial-like.	0.446
HLCS	NFKBID	ENSPMJP00000012369	ENSPMJP00000008529	Biotin---protein ligase.	NF-kappa-B inhibitor delta-like isoform X1.	0.593
LOC107211479	CDC42BPA	ENSPMJP00000026150	ENSPMJP00000014956	Proline dehydrogenase 1, mitochondrial-like.	Serine/threonine-protein kinase MRCK alpha isoform X1.	0.671
LOC107211479	HLCS	ENSPMJP00000026150	ENSPMJP00000012369	Proline dehydrogenase 1, mitochondrial-like.	Biotin---protein ligase.	0.446
LOC107211479	NFKBID	ENSPMJP00000026150	ENSPMJP00000008529	Proline dehydrogenase 1, mitochondrial-like.	NF-kappa-B inhibitor delta-like isoform X1.	0.627
NFKB1	ENSPMJP00000004579	ENSPMJP00000012673	ENSPMJP00000004579	Nuclear factor NF-kappa-B p105 subunit isoform X1.	annotation not available	0.828
NFKB1	NFKB2	ENSPMJP00000012673	ENSPMJP00000020897	Nuclear factor NF-kappa-B p105 subunit isoform X1.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2.	0.903
NFKB1	NFKBID	ENSPMJP00000012673	ENSPMJP00000008529	Nuclear factor NF-kappa-B p105 subunit isoform X1.	NF-kappa-B inhibitor delta-like isoform X1.	0.598
NFKB1	REL	ENSPMJP00000012673	ENSPMJP00000019558	Nuclear factor NF-kappa-B p105 subunit isoform X1.	C-Rel proto-oncogene protein.	0.860
NFKB1	SETD6	ENSPMJP00000012673	ENSPMJP00000019681	Nuclear factor NF-kappa-B p105 subunit isoform X1.	N-lysine methyltransferase SETD6 isoform X1.	0.535