NFKBID protein (Parus major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NFKBID

NF-kappa-B inhibitor delta-like isoform X1. (461 aa)

Predicted Functional Partners:

CDC42BPA

0.519

ASB13

0.512

ASB14

0.502

ASB11

0.497

ASB9

0.490

CDKN2C

0.487

ASB1

0.471

ENSPMJP00000017938

0.469

ASB12

0.467

MTPN

0.465

Your Current Organism:

Parus major

NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB1	ASB11	ENSPMJP00000007565	ENSPMJP00000015163	Ankyrin repeat and SOCS box protein 1.	Ankyrin repeat and SOCS box protein 11.	0.432
ASB1	ASB12	ENSPMJP00000007565	ENSPMJP00000016147	Ankyrin repeat and SOCS box protein 1.	Ankyrin repeat and SOCS box protein 12.	0.457
ASB1	ASB13	ENSPMJP00000007565	ENSPMJP00000017409	Ankyrin repeat and SOCS box protein 1.	Ankyrin repeat and SOCS box protein 13.	0.545
ASB1	ASB9	ENSPMJP00000007565	ENSPMJP00000015166	Ankyrin repeat and SOCS box protein 1.	Ankyrin repeat and SOCS box protein 9 isoform X1.	0.476
ASB1	CDKN2C	ENSPMJP00000007565	ENSPMJP00000000945	Ankyrin repeat and SOCS box protein 1.	Cyclin-dependent kinase 4 inhibitor C.	0.498
ASB1	ENSPMJP00000017938	ENSPMJP00000007565	ENSPMJP00000017938	Ankyrin repeat and SOCS box protein 1.	annotation not available	0.495
ASB1	NFKBID	ENSPMJP00000007565	ENSPMJP00000008529	Ankyrin repeat and SOCS box protein 1.	NF-kappa-B inhibitor delta-like isoform X1.	0.471
ASB11	ASB1	ENSPMJP00000015163	ENSPMJP00000007565	Ankyrin repeat and SOCS box protein 11.	Ankyrin repeat and SOCS box protein 1.	0.432
ASB11	ASB12	ENSPMJP00000015163	ENSPMJP00000016147	Ankyrin repeat and SOCS box protein 11.	Ankyrin repeat and SOCS box protein 12.	0.409
ASB11	CDKN2C	ENSPMJP00000015163	ENSPMJP00000000945	Ankyrin repeat and SOCS box protein 11.	Cyclin-dependent kinase 4 inhibitor C.	0.500
ASB11	MTPN	ENSPMJP00000015163	ENSPMJP00000011641	Ankyrin repeat and SOCS box protein 11.	Myotrophin.	0.488
ASB11	NFKBID	ENSPMJP00000015163	ENSPMJP00000008529	Ankyrin repeat and SOCS box protein 11.	NF-kappa-B inhibitor delta-like isoform X1.	0.497
ASB12	ASB1	ENSPMJP00000016147	ENSPMJP00000007565	Ankyrin repeat and SOCS box protein 12.	Ankyrin repeat and SOCS box protein 1.	0.457
ASB12	ASB11	ENSPMJP00000016147	ENSPMJP00000015163	Ankyrin repeat and SOCS box protein 12.	Ankyrin repeat and SOCS box protein 11.	0.409
ASB12	ASB13	ENSPMJP00000016147	ENSPMJP00000017409	Ankyrin repeat and SOCS box protein 12.	Ankyrin repeat and SOCS box protein 13.	0.529
ASB12	ASB9	ENSPMJP00000016147	ENSPMJP00000015166	Ankyrin repeat and SOCS box protein 12.	Ankyrin repeat and SOCS box protein 9 isoform X1.	0.438
ASB12	CDKN2C	ENSPMJP00000016147	ENSPMJP00000000945	Ankyrin repeat and SOCS box protein 12.	Cyclin-dependent kinase 4 inhibitor C.	0.524
ASB12	ENSPMJP00000017938	ENSPMJP00000016147	ENSPMJP00000017938	Ankyrin repeat and SOCS box protein 12.	annotation not available	0.508
ASB12	MTPN	ENSPMJP00000016147	ENSPMJP00000011641	Ankyrin repeat and SOCS box protein 12.	Myotrophin.	0.487
ASB12	NFKBID	ENSPMJP00000016147	ENSPMJP00000008529	Ankyrin repeat and SOCS box protein 12.	NF-kappa-B inhibitor delta-like isoform X1.	0.467