Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSH3Protein phosphatase Slingshot homolog 3 isoform X1. (554 aa)    
Predicted Functional Partners:
CFL2
Cofilin-2.
    
 0.969
SSH2
Protein phosphatase Slingshot homolog 2 isoform X1.
  
 
 
0.967
SSH1
Protein phosphatase Slingshot homolog 1 isoform X1.
  
  
 
0.902
NMD3
Nonsense-mediated mRNA decay protein 3.
   
 
 0.690
FOXJ2
Forkhead box protein J2 isoform X1.
    
 0.652
MMAB
Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial.
      
 0.652
TRPV6
Transient receptor potential cation channel subfamily V member 5 isoform X1.
      
 0.619
GSN
Gelsolin isoform X1.
    
   0.601
FLOT2
Flotillin-2 isoform X1.
    
 
 0.597
AICDA
Single-stranded DNA cytosine deaminase isoform X1.
      
 0.595
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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