VIM protein (Parus major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VIM

Vimentin. (561 aa)

Predicted Functional Partners:

ENSPMJP00000004267

0.655

LOC107198963

0.655

TCAP

0.652

CASP7

0.639

ZEB1

0.623

CASP6

0.622

CASP3

0.599

ENSPMJP00000024444

0.574

ENSPMJP00000023394

0.559

ENSPMJP00000023397

0.559

Your Current Organism:

Parus major

NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP3	CASP6	ENSPMJP00000002588	ENSPMJP00000013266	Caspase 3.	Caspase 6.	0.560
CASP3	CASP7	ENSPMJP00000002588	ENSPMJP00000006304	Caspase 3.	Caspase-7 isoform X1.	0.659
CASP3	VIM	ENSPMJP00000002588	ENSPMJP00000008667	Caspase 3.	Vimentin.	0.599
CASP6	CASP3	ENSPMJP00000013266	ENSPMJP00000002588	Caspase 6.	Caspase 3.	0.560
CASP6	VIM	ENSPMJP00000013266	ENSPMJP00000008667	Caspase 6.	Vimentin.	0.622
CASP7	CASP3	ENSPMJP00000006304	ENSPMJP00000002588	Caspase-7 isoform X1.	Caspase 3.	0.659
CASP7	VIM	ENSPMJP00000006304	ENSPMJP00000008667	Caspase-7 isoform X1.	Vimentin.	0.639
ENSPMJP00000004267	LOC107198963	ENSPMJP00000004267	ENSPMJP00000007044	Class II histocompatibility antigen, B-L beta chain-like.	Class II histocompatibility antigen, B-L beta chain-like isoform X1.	0.904
ENSPMJP00000004267	VIM	ENSPMJP00000004267	ENSPMJP00000008667	Class II histocompatibility antigen, B-L beta chain-like.	Vimentin.	0.655
ENSPMJP00000023394	VIM	ENSPMJP00000023394	ENSPMJP00000008667	annotation not available	Vimentin.	0.559
ENSPMJP00000023397	VIM	ENSPMJP00000023397	ENSPMJP00000008667	annotation not available	Vimentin.	0.559
ENSPMJP00000024444	VIM	ENSPMJP00000024444	ENSPMJP00000008667	annotation not available	Vimentin.	0.574
LOC107198963	ENSPMJP00000004267	ENSPMJP00000007044	ENSPMJP00000004267	Class II histocompatibility antigen, B-L beta chain-like isoform X1.	Class II histocompatibility antigen, B-L beta chain-like.	0.904
LOC107198963	VIM	ENSPMJP00000007044	ENSPMJP00000008667	Class II histocompatibility antigen, B-L beta chain-like isoform X1.	Vimentin.	0.655
TCAP	VIM	ENSPMJP00000024340	ENSPMJP00000008667	Telethonin.	Vimentin.	0.652
VIM	CASP3	ENSPMJP00000008667	ENSPMJP00000002588	Vimentin.	Caspase 3.	0.599
VIM	CASP6	ENSPMJP00000008667	ENSPMJP00000013266	Vimentin.	Caspase 6.	0.622
VIM	CASP7	ENSPMJP00000008667	ENSPMJP00000006304	Vimentin.	Caspase-7 isoform X1.	0.639
VIM	ENSPMJP00000004267	ENSPMJP00000008667	ENSPMJP00000004267	Vimentin.	Class II histocompatibility antigen, B-L beta chain-like.	0.655
VIM	ENSPMJP00000023394	ENSPMJP00000008667	ENSPMJP00000023394	Vimentin.	annotation not available	0.559