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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIDA2-iminobutanoate/2-iminopropanoate deaminase. (136 aa)    
Predicted Functional Partners:
HACL1
2-hydroxyacyl-CoA lyase 1.
    
 0.855
EEF2
Elongation factor 2.
   
 0.669
SDSL
L-serine/L-threonine ammonia-lyase.
  
 0.627
CNOT9
Cell differentiation protein RCD1 homolog isoform X1.
    
 
 0.615
CNOT4
CCR4-NOT transcription complex subunit 4 isoform X1.
    
 
 0.614
CNOT1
CCR4-NOT transcription complex subunit 1 isoform X6.
    
 
 0.614
LOC107207149
Uncharacterized protein LOC107207149 isoform X1.
  
 0.578
EXOSC6
Exosome complex component MTR3.
  
 
 0.575
UGCG
Ceramide glucosyltransferase.
  
 0.560
SRR
Serine racemase.
  
 0.560
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.