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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF13E3 ubiquitin-protein ligase RNF13. (381 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin-large subunit ribosomal protein L40e.
    
  0.550
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
  0.550
HSF2BP
Heat shock factor 2-binding protein isoform X1.
      
 0.533
RNF128
E3 ubiquitin-protein ligase RNF128.
      
0.524
TMEM183A
Transmembrane protein 183A isoform X1.
      
 0.508
ENSPMJP00000027002
Ubiquitin.
    
  0.503
NUS1
Dehydrodolichyl diphosphate synthase complex subunit NUS1.
    
 
 0.479
AK4
Adenylate kinase 4, mitochondrial.
      
 0.467
FZD6
Frizzled 6.
    
 
 0.455
TTC26
Intraflagellar transport protein 56 isoform X1.
      
 0.447
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.