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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP40U5 small nuclear ribonucleoprotein 40 kDa protein. (117 aa)    
Predicted Functional Partners:
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.998
PRPF6
Pre-mRNA-processing factor 6.
   
 0.998
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.998
ENSPMJP00000017931
LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like.
   
 0.997
DDX23
DEAD-box helicase 23.
    
 0.988
PRPF19
Pre-mRNA-processing factor 19.
   
 
 0.982
CDC5L
Cell division cycle 5-like protein.
   
   0.980
CDC40
Pre-mRNA-processing factor 17.
    
   0.980
MFAP1
Microfibrillar-associated protein 1.
   
   0.978
TXNL4A
Thioredoxin-like protein 4A isoform X1.
    
 0.978
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.