GALNT18 protein (Parus major) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GALNT18

Polypeptide N-acetylgalactosaminyltransferase 18. (567 aa)

Predicted Functional Partners:

GCNT1

0.927

ST6GALNAC1

0.906

C1GALT1C1

0.682

C1GALT1

0.678

LOC107199204

0.678

Your Current Organism:

Parus major

NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1GALT1	C1GALT1C1	ENSPMJP00000013205	ENSPMJP00000015005	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	C1GALT1-specific chaperone 1.	0.980
C1GALT1	GALNT18	ENSPMJP00000013205	ENSPMJP00000009299	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	Polypeptide N-acetylgalactosaminyltransferase 18.	0.678
C1GALT1	GCNT1	ENSPMJP00000013205	ENSPMJP00000024084	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase.	0.924
C1GALT1	LOC107199204	ENSPMJP00000013205	ENSPMJP00000021515	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like.	0.903
C1GALT1	ST6GALNAC1	ENSPMJP00000013205	ENSPMJP00000010551	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7A).	0.952
C1GALT1C1	C1GALT1	ENSPMJP00000015005	ENSPMJP00000013205	C1GALT1-specific chaperone 1.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	0.980
C1GALT1C1	GALNT18	ENSPMJP00000015005	ENSPMJP00000009299	C1GALT1-specific chaperone 1.	Polypeptide N-acetylgalactosaminyltransferase 18.	0.682
C1GALT1C1	GCNT1	ENSPMJP00000015005	ENSPMJP00000024084	C1GALT1-specific chaperone 1.	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase.	0.917
C1GALT1C1	LOC107199204	ENSPMJP00000015005	ENSPMJP00000021515	C1GALT1-specific chaperone 1.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like.	0.971
C1GALT1C1	ST6GALNAC1	ENSPMJP00000015005	ENSPMJP00000010551	C1GALT1-specific chaperone 1.	Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7A).	0.933
GALNT18	C1GALT1	ENSPMJP00000009299	ENSPMJP00000013205	Polypeptide N-acetylgalactosaminyltransferase 18.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	0.678
GALNT18	C1GALT1C1	ENSPMJP00000009299	ENSPMJP00000015005	Polypeptide N-acetylgalactosaminyltransferase 18.	C1GALT1-specific chaperone 1.	0.682
GALNT18	GCNT1	ENSPMJP00000009299	ENSPMJP00000024084	Polypeptide N-acetylgalactosaminyltransferase 18.	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase.	0.927
GALNT18	LOC107199204	ENSPMJP00000009299	ENSPMJP00000021515	Polypeptide N-acetylgalactosaminyltransferase 18.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like.	0.678
GALNT18	ST6GALNAC1	ENSPMJP00000009299	ENSPMJP00000010551	Polypeptide N-acetylgalactosaminyltransferase 18.	Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7A).	0.906
GCNT1	C1GALT1	ENSPMJP00000024084	ENSPMJP00000013205	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	0.924
GCNT1	C1GALT1C1	ENSPMJP00000024084	ENSPMJP00000015005	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase.	C1GALT1-specific chaperone 1.	0.917
GCNT1	GALNT18	ENSPMJP00000024084	ENSPMJP00000009299	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase.	Polypeptide N-acetylgalactosaminyltransferase 18.	0.927
GCNT1	LOC107199204	ENSPMJP00000024084	ENSPMJP00000021515	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like.	0.923
GCNT1	ST6GALNAC1	ENSPMJP00000024084	ENSPMJP00000010551	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase.	Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7A).	0.923