STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107202554Transcription elongation factor B polypeptide 3-like. (598 aa)    
Predicted Functional Partners:
LEO1
RNA polymerase-associated protein LEO1 isoform X1.
    
 0.972
ELOC
Transcription elongation factor B polypeptide 1.
    
 0.924
WDR61
WD repeat-containing protein 61 isoform X1.
    
 0.746
ENSPMJP00000007827
annotation not available
   
 0.745
POLR2B
DNA-directed RNA polymerase II subunit RPB2.
    
 0.727
ELL
RNA polymerase II elongation factor ELL.
     
 0.686
RPL5
Large subunit ribosomal protein L5e.
    
 
 0.685
SSRP1
Structure-specific recognition protein 1.
    
 0.653
RPL23
Large subunit ribosomal protein L23e.
    
 
 0.651
CDK9
Cyclin-dependent kinase 9 isoform X1.
     
 0.645
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.