STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSPAN8Tetraspanin-8. (240 aa)    
Predicted Functional Partners:
ITGA4
Integrin alpha 4.
   
 0.704
PTPRC
Receptor-type tyrosine-protein phosphatase C isoform X1.
     
 0.642
ZFC3H1
Zinc finger C3H1 domain-containing protein isoform X1.
      
 0.533
EPCAM
Epithelial cell adhesion molecule.
      
 0.524
PTGFRN
Prostaglandin F2 receptor negative regulator isoform X1.
    
 
 0.518
USH1C
Harmonin isoform X1.
   
 0.474
TSG101
Tumor susceptibility gene 101 protein isoform X1.
      
 0.440
SERGEF
LOW QUALITY PROTEIN: secretion-regulating guanine nucleotide exchange factor.
      
 0.437
HHEX
Hematopoietically-expressed homeobox protein HHEX.
      
 0.436
TBC1D15
TBC1 domain family member 15 isoform X1.
      
 0.429
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.