STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPHP1Nephrocystin-1 isoform X1. (554 aa)    
Predicted Functional Partners:
NPHP4
Nephrocystin-4 isoform X1.
   
 0.956
ITSN2
Intersectin-2 isoform X1.
     
 0.938
ENSPMJP00000002279
annotation not available
    
 0.905
RPGRIP1L
RPGRIP1 like.
    
 0.839
MYSM1
Histone H2A deubiquitinase MYSM1 isoform X1.
    
 0.765
CEP290
Centrosomal protein 290.
   
 0.722
TMEM67
Meckelin isoform X1.
   
  
 0.712
AHI1
Jouberin isoform X1.
    
 0.709
MKS1
Meckel syndrome type 1 protein.
   
 
 0.687
TMEM231
Transmembrane protein 231.
   
  
 0.685
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.