STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LDB3LIM domain binding 3. (741 aa)    
Predicted Functional Partners:
MYOT
Myotilin isoform X2.
   
  
 0.548
IFT57
Intraflagellar transport protein 57 homolog.
    
 0.525
IFT80
Intraflagellar transport protein 80 homolog.
    
 0.518
IFT172
Intraflagellar transport protein 172 homolog isoform X3.
    
 0.517
TRAF3IP1
TRAF3-interacting protein 1 isoform X1.
    
 0.513
CASK
Calcium/calmodulin-dependent serine protein kinase.
    
 0.501
MYOZ2
Myozenin-2 isoform X1.
   
  
 0.499
IFT88
Intraflagellar transport protein 88 homolog isoform X1.
    
 0.484
IFT81
Intraflagellar transport protein 81 homolog.
    
 0.476
IFT52
Intraflagellar transport protein 52 homolog.
    
 0.461
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.