STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG8Protein SMG8. (1059 aa)    
Predicted Functional Partners:
SMG1
Serine/threonine-protein kinase SMG1 isoform X1.
   
 0.939
ENSPMJP00000021991
annotation not available
   
 0.939
SMG5
Protein SMG5 isoform X1.
     
 0.846
SMG6
Telomerase-binding protein EST1A isoform X1.
     
 0.846
SMG7
SMG7 nonsense mediated mRNA decay factor.
     
 0.825
MTOR
Serine/threonine-protein kinase mTOR isoform X1.
   
 0.765
PRKDC
DNA-dependent protein kinase catalytic subunit isoform X1.
   
 0.761
PNRC2
Proline-rich nuclear receptor coactivator 2.
     
 0.759
UPF2
Regulator of nonsense transcripts 2.
   
  
 0.668
DCP1A
MRNA-decapping enzyme 1A isoform X1.
   
 
 0.660
Your Current Organism:
Parus major
NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.