STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET32358.1stearoyl-CoA desaturase (delta-9 desaturase). (396 aa)    
Predicted Functional Partners:
SET17231.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
  
 0.713
SES81911.1
Fatty acid desaturase.
   
 0.646
SES69608.1
Short chain dehydrogenase.
    
 0.585
SET08287.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.581
SET32333.1
Permease of the drug/metabolite transporter (DMT) superfamily.
 
 
   0.580
SES84065.1
Short chain dehydrogenase.
  
 0.573
SET15334.1
Ribonucleoside-diphosphate reductase beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
  
  
  0.549
SES65949.1
Short-chain dehydrogenase.
   
 0.539
SET04433.1
Short-chain dehydrogenase.
   
 0.539
SET21022.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.539
Your Current Organism:
Nitrosomonas marina
NCBI taxonomy Id: 917
Other names: N. marina, Nitrosomonas marina Koops et al. 2001, strain Nm 22
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