STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP93259.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)    
Predicted Functional Partners:
AMP93258.1
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.990
AMP92096.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.898
AMP93277.1
Toxin HipA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  
0.844
AMP92900.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.636
AMP93276.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.629
AMP92122.1
Cell filamentation protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.480
AMP92108.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.418
Your Current Organism:
Legionella pneumophila pascullei
NCBI taxonomy Id: 91890
Other names: ATCC 33737, CCUG 31226 A, CIP 105570, DSM 7515, L. pneumophila subsp. pascullei, Legionella pneumophila subsp. pascullei, NCTC 12273, strain U8W
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.