STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fabG_4-23-hydroxy-2-methylbutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (247 aa)    
Predicted Functional Partners:
APF03785.1
Fatty acyl-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.860
APF03585.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.758
fadH
NADPH-dependent 2,4-dienoyl-CoA reductase; Catalyzes the formation of trans-2- enoyl-CoA from 2,4-dienoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.739
xylA
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.704
ycaC
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.702
pdhB_2
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.686
APF03929.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.684
APF04268.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.684
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
      0.682
ppsE
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.668
Your Current Organism:
Legionella pneumophila fraseri
NCBI taxonomy Id: 91892
Other names: ATCC 33156, CCUG 13398, CIP 103858, DSM 7514, L. pneumophila subsp. fraseri, Legionella pneumophila subsp. fraseri, NCTC 11233, strain Los Angeles 1
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