STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV08_0856450S ribosomal protein L3. (311 aa)    
Predicted Functional Partners:
PV08_06508
Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.
 
 0.999
PV08_06788
Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
  
 0.998
PV08_04403
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
 
 
 0.998
PV08_02157
Ribosomal protein L15.
  
 0.998
PV08_07880
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
  
 0.998
PV08_04371
Ribosomal protein L13.
  
 0.998
PV08_02836
Ribosomal_L2_C domain-containing protein.
 
 0.998
PV08_01920
Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
  
 0.998
PV08_09300
Ribosomal protein L19.
  
 
 0.997
PV08_05412
Uncharacterized protein.
  
 
 0.997
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.