PV08_07540 protein (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV08_07540

Uncharacterized protein. (261 aa)

Predicted Functional Partners:

PV08_00427

0.944

PV08_01448

0.924

PV08_04984

0.922

PV08_01144

0.915

PV08_00577

0.861

PV08_02550

0.839

PV08_08286

0.835

PV08_05504

0.807

PV08_07544

0.625

PV08_01140

0.588

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00427	PV08_00577	A0A0D2A4U9	A0A0D2A5J2	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	Uncharacterized protein.	0.950
PV08_00427	PV08_01144	A0A0D2A4U9	A0A0D2CAH8	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	EMC1_C domain-containing protein.	0.988
PV08_00427	PV08_01448	A0A0D2A4U9	A0A0D2BQY4	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.993
PV08_00427	PV08_02550	A0A0D2A4U9	A0A0D1ZZV1	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	DUF2012 domain-containing protein.	0.971
PV08_00427	PV08_04984	A0A0D2A4U9	A0A0D2C2B1	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	TPR_REGION domain-containing protein.	0.990
PV08_00427	PV08_05504	A0A0D2A4U9	A0A0D2B979	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	Uncharacterized protein.	0.916
PV08_00427	PV08_07540	A0A0D2A4U9	A0A0D1YIJ0	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	Uncharacterized protein.	0.944
PV08_00427	PV08_08286	A0A0D2A4U9	A0A0D2BPQ7	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	Uncharacterized protein.	0.879
PV08_00577	PV08_00427	A0A0D2A5J2	A0A0D2A4U9	Uncharacterized protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.950
PV08_00577	PV08_01144	A0A0D2A5J2	A0A0D2CAH8	Uncharacterized protein.	EMC1_C domain-containing protein.	0.947
PV08_00577	PV08_01448	A0A0D2A5J2	A0A0D2BQY4	Uncharacterized protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.945
PV08_00577	PV08_02550	A0A0D2A5J2	A0A0D1ZZV1	Uncharacterized protein.	DUF2012 domain-containing protein.	0.961
PV08_00577	PV08_04984	A0A0D2A5J2	A0A0D2C2B1	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.952
PV08_00577	PV08_07540	A0A0D2A5J2	A0A0D1YIJ0	Uncharacterized protein.	Uncharacterized protein.	0.861
PV08_01140	PV08_07540	A0A0D2BPY9	A0A0D1YIJ0	Ribosomal protein S16.	Uncharacterized protein.	0.588
PV08_01144	PV08_00427	A0A0D2CAH8	A0A0D2A4U9	EMC1_C domain-containing protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.988
PV08_01144	PV08_00577	A0A0D2CAH8	A0A0D2A5J2	EMC1_C domain-containing protein.	Uncharacterized protein.	0.947
PV08_01144	PV08_01448	A0A0D2CAH8	A0A0D2BQY4	EMC1_C domain-containing protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.988
PV08_01144	PV08_02550	A0A0D2CAH8	A0A0D1ZZV1	EMC1_C domain-containing protein.	DUF2012 domain-containing protein.	0.956
PV08_01144	PV08_04984	A0A0D2CAH8	A0A0D2C2B1	EMC1_C domain-containing protein.	TPR_REGION domain-containing protein.	0.992