PV08_10061 protein (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV08_10061

Uncharacterized protein. (1329 aa)

Predicted Functional Partners:

PV08_07470

0.725

PV08_05809

0.611

PV08_07014

0.535

PV08_09315

0.529

PV08_10384

0.486

PV08_02923

0.485

PV08_04939

0.480

PV08_11246

0.471

PV08_10241

0.464

PV08_09545

0.463

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_02923	PV08_09315	A0A0D2C4X1	A0A0D1YAW2	26S proteasome regulatory subunit rpn11.	Ubiquitin carboxyl-terminal hydrolase.	0.503
PV08_02923	PV08_10061	A0A0D2C4X1	A0A0D1ZCJ5	26S proteasome regulatory subunit rpn11.	Uncharacterized protein.	0.485
PV08_02923	PV08_10384	A0A0D2C4X1	A0A0D2AXE0	26S proteasome regulatory subunit rpn11.	Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.	0.420
PV08_04939	PV08_10061	A0A0D2C259	A0A0D1ZCJ5	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.480
PV08_05809	PV08_09545	A0A0D2BWS8	A0A0D2BM52	Uncharacterized protein.	Uncharacterized protein.	0.658
PV08_05809	PV08_10061	A0A0D2BWS8	A0A0D1ZCJ5	Uncharacterized protein.	Uncharacterized protein.	0.611
PV08_05809	PV08_10384	A0A0D2BWS8	A0A0D2AXE0	Uncharacterized protein.	Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.	0.763
PV08_07014	PV08_10061	A0A0D1ZN15	A0A0D1ZCJ5	Uncharacterized protein.	Uncharacterized protein.	0.535
PV08_07014	PV08_11246	A0A0D1ZN15	A0A0D2BFY6	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.755
PV08_07470	PV08_10061	A0A0D1YIC3	A0A0D1ZCJ5	SPX domain-containing protein.	Uncharacterized protein.	0.725
PV08_09315	PV08_02923	A0A0D1YAW2	A0A0D2C4X1	Ubiquitin carboxyl-terminal hydrolase.	26S proteasome regulatory subunit rpn11.	0.503
PV08_09315	PV08_10061	A0A0D1YAW2	A0A0D1ZCJ5	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.529
PV08_09545	PV08_05809	A0A0D2BM52	A0A0D2BWS8	Uncharacterized protein.	Uncharacterized protein.	0.658
PV08_09545	PV08_10061	A0A0D2BM52	A0A0D1ZCJ5	Uncharacterized protein.	Uncharacterized protein.	0.463
PV08_09545	PV08_10384	A0A0D2BM52	A0A0D2AXE0	Uncharacterized protein.	Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.	0.999
PV08_10061	PV08_02923	A0A0D1ZCJ5	A0A0D2C4X1	Uncharacterized protein.	26S proteasome regulatory subunit rpn11.	0.485
PV08_10061	PV08_04939	A0A0D1ZCJ5	A0A0D2C259	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.480
PV08_10061	PV08_05809	A0A0D1ZCJ5	A0A0D2BWS8	Uncharacterized protein.	Uncharacterized protein.	0.611
PV08_10061	PV08_07014	A0A0D1ZCJ5	A0A0D1ZN15	Uncharacterized protein.	Uncharacterized protein.	0.535
PV08_10061	PV08_07470	A0A0D1ZCJ5	A0A0D1YIC3	Uncharacterized protein.	SPX domain-containing protein.	0.725