STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV08_08029RRM domain-containing protein. (687 aa)    
Predicted Functional Partners:
PV08_11781
Uncharacterized protein.
   
 0.999
PV08_08618
Helicase ATP-binding domain-containing protein.
    
 0.998
PV08_11118
PWI domain-containing protein.
    
 0.997
PV08_00598
RRM domain-containing protein.
    
 0.997
PV08_03926
Uncharacterized protein.
   
 0.995
PV08_04337
Pre-mRNA-splicing factor cwc22.
     
 0.983
PV08_03840
ATP-dependent RNA helicase sub2.
    
 0.983
PV08_06705
ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family.
   
 0.979
PV08_03847
Uncharacterized protein.
     
 0.977
PV08_09697
WD_REPEATS_REGION domain-containing protein.
   
 
  0.976
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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