STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV08_05615Uncharacterized protein. (1294 aa)    
Predicted Functional Partners:
PV08_05598
Uncharacterized protein.
   
 0.976
PV08_10752
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.975
PV08_10313
SF3b1 domain-containing protein.
   
 0.974
PV08_06197
PHD finger-like domain-containing protein 5B.
   
 0.973
PV08_09845
PSP domain-containing protein.
   
 0.973
PV08_11208
Uncharacterized protein.
   
 0.972
PV08_07670
RRM domain-containing protein.
    
 0.971
PV08_06792
Matrin-type domain-containing protein.
   
 0.969
PV08_02685
Matrin-type domain-containing protein.
   
 0.966
PV08_08904
Uncharacterized protein.
    
 0.964
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.