STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV08_04263Glutamate-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (612 aa)    
Predicted Functional Partners:
PV08_05734
60S ribosomal protein L30.
   
 0.986
PV08_03819
Ribosomal_L23eN domain-containing protein.
   
 0.985
PV08_05465
Uncharacterized protein.
   
 0.984
PV08_04797
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.982
PV08_03328
Uncharacterized protein.
   
 0.982
PV08_11750
60S ribosomal protein L5.
   
 0.978
PV08_11236
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.976
PV08_09117
Ribosomal protein L24.
   
 0.976
PV08_04662
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 0.975
PV08_01790
60S ribosomal protein L32.
   
 0.975
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.