PV08_09506 protein (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV08_09506

Uncharacterized protein. (721 aa)

Predicted Functional Partners:

PV08_07531

0.986

PV08_01268

0.965

PV08_10950

0.964

PV08_04284

0.936

PV08_09266

0.935

PV08_06054

0.888

PV08_06214

0.888

PV08_05980

0.888

PV08_02945

0.871

PV08_09800

0.818

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_01268	PV08_02945	A0A0D1YZF4	A0A0D1YTS4	Centromere/microtubule-binding protein cbf5.	Uncharacterized protein.	0.982
PV08_01268	PV08_04284	A0A0D1YZF4	A0A0D2BDS0	Centromere/microtubule-binding protein cbf5.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.983
PV08_01268	PV08_05980	A0A0D1YZF4	A0A0D2BBF9	Centromere/microtubule-binding protein cbf5.	60S ribosomal protein L8-B.	0.914
PV08_01268	PV08_06054	A0A0D1YZF4	A0A0D2BAP5	Centromere/microtubule-binding protein cbf5.	Uncharacterized protein.	0.914
PV08_01268	PV08_06214	A0A0D1YZF4	A0A0D2BAZ4	Centromere/microtubule-binding protein cbf5.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.914
PV08_01268	PV08_07531	A0A0D1YZF4	A0A0D1ZPJ8	Centromere/microtubule-binding protein cbf5.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
PV08_01268	PV08_09506	A0A0D1YZF4	A0A0D2B0I7	Centromere/microtubule-binding protein cbf5.	Uncharacterized protein.	0.965
PV08_01268	PV08_09800	A0A0D1YZF4	A0A0D2B0W8	Centromere/microtubule-binding protein cbf5.	Uncharacterized protein.	0.987
PV08_01268	PV08_10950	A0A0D1YZF4	A0A0D2AY65	Centromere/microtubule-binding protein cbf5.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.999
PV08_02945	PV08_01268	A0A0D1YTS4	A0A0D1YZF4	Uncharacterized protein.	Centromere/microtubule-binding protein cbf5.	0.982
PV08_02945	PV08_04284	A0A0D1YTS4	A0A0D2BDS0	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.794
PV08_02945	PV08_05980	A0A0D1YTS4	A0A0D2BBF9	Uncharacterized protein.	60S ribosomal protein L8-B.	0.794
PV08_02945	PV08_06054	A0A0D1YTS4	A0A0D2BAP5	Uncharacterized protein.	Uncharacterized protein.	0.794
PV08_02945	PV08_06214	A0A0D1YTS4	A0A0D2BAZ4	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.794
PV08_02945	PV08_07531	A0A0D1YTS4	A0A0D1ZPJ8	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.974
PV08_02945	PV08_09266	A0A0D1YTS4	A0A0D1ZG97	Uncharacterized protein.	tRNA pseudouridine(55) synthase.	0.928
PV08_02945	PV08_09506	A0A0D1YTS4	A0A0D2B0I7	Uncharacterized protein.	Uncharacterized protein.	0.871
PV08_02945	PV08_10950	A0A0D1YTS4	A0A0D2AY65	Uncharacterized protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.975
PV08_04284	PV08_01268	A0A0D2BDS0	A0A0D1YZF4	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Centromere/microtubule-binding protein cbf5.	0.983
PV08_04284	PV08_02945	A0A0D2BDS0	A0A0D1YTS4	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein.	0.794