PV08_04808 protein (Exophiala spinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV08_04808

PKS_ER domain-containing protein. (368 aa)

Predicted Functional Partners:

PV08_07219

0.704

PV08_07488

0.671

PV08_02190

0.621

PV08_03862

0.611

PV08_10617

0.595

PV08_09093

0.588

PV08_00128

0.573

PV08_08550

0.573

PV08_05212

0.573

PV08_02897

0.573

Your Current Organism:

Exophiala spinifera

NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV08_00128	PV08_02190	A0A0D1YWB7	A0A0D2BT76	Uncharacterized protein.	Uncharacterized protein.	0.573
PV08_00128	PV08_04808	A0A0D1YWB7	A0A0D2BF57	Uncharacterized protein.	PKS_ER domain-containing protein.	0.573
PV08_00128	PV08_07219	A0A0D1YWB7	A0A0D1YHP1	Uncharacterized protein.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.623
PV08_00128	PV08_09093	A0A0D1YWB7	A0A0D2AZC7	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.423
PV08_00128	PV08_10617	A0A0D1YWB7	A0A0D1ZE81	Uncharacterized protein.	PKS_ER domain-containing protein.	0.573
PV08_02190	PV08_00128	A0A0D2BT76	A0A0D1YWB7	Uncharacterized protein.	Uncharacterized protein.	0.573
PV08_02190	PV08_02897	A0A0D2BT76	A0A0D2BI29	Uncharacterized protein.	Fe-ADH domain-containing protein.	0.573
PV08_02190	PV08_03862	A0A0D2BT76	A0A0D2BZC8	Uncharacterized protein.	MADS-box domain-containing protein.	0.611
PV08_02190	PV08_04808	A0A0D2BT76	A0A0D2BF57	Uncharacterized protein.	PKS_ER domain-containing protein.	0.621
PV08_02190	PV08_05212	A0A0D2BT76	A0A0D1ZQT9	Uncharacterized protein.	Fe-ADH domain-containing protein.	0.573
PV08_02190	PV08_07219	A0A0D2BT76	A0A0D1YHP1	Uncharacterized protein.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.848
PV08_02190	PV08_07488	A0A0D2BT76	A0A0D2BTW4	Uncharacterized protein.	Fe-ADH domain-containing protein.	0.966
PV08_02190	PV08_08550	A0A0D2BT76	A0A0D1ZKK7	Uncharacterized protein.	Fe-ADH domain-containing protein.	0.573
PV08_02190	PV08_10617	A0A0D2BT76	A0A0D1ZE81	Uncharacterized protein.	PKS_ER domain-containing protein.	0.620
PV08_02897	PV08_02190	A0A0D2BI29	A0A0D2BT76	Fe-ADH domain-containing protein.	Uncharacterized protein.	0.573
PV08_02897	PV08_04808	A0A0D2BI29	A0A0D2BF57	Fe-ADH domain-containing protein.	PKS_ER domain-containing protein.	0.573
PV08_02897	PV08_07219	A0A0D2BI29	A0A0D1YHP1	Fe-ADH domain-containing protein.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.623
PV08_02897	PV08_09093	A0A0D2BI29	A0A0D2AZC7	Fe-ADH domain-containing protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.423
PV08_02897	PV08_10617	A0A0D2BI29	A0A0D1ZE81	Fe-ADH domain-containing protein.	PKS_ER domain-containing protein.	0.573
PV08_03862	PV08_02190	A0A0D2BZC8	A0A0D2BT76	MADS-box domain-containing protein.	Uncharacterized protein.	0.611