STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV08_00206Alpha-mann_mid domain-containing protein. (1087 aa)    
Predicted Functional Partners:
PV08_10555
Uncharacterized protein.
   
 
 0.685
PV08_01462
Glyco_hydro_63 domain-containing protein.
   
  
 0.685
PV08_06706
HET domain-containing protein.
   
 
 0.676
PV08_01794
Uncharacterized protein.
   
 
 0.676
PV08_01161
Uncharacterized protein.
   
  
 0.667
PV08_02330
Uncharacterized protein; Belongs to the peptidase M18 family.
   
 
 0.606
PV08_11153
Aspartyl aminopeptidase; Belongs to the peptidase M18 family.
   
 
 0.588
PV08_04962
Glycogen debranching enzyme.
   
    0.564
PV08_08934
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
   0.563
PV08_02608
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.522
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.