STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV08_01918WD_REPEATS_REGION domain-containing protein. (1052 aa)    
Predicted Functional Partners:
PV08_00683
Ubiquitin carboxyl-terminal hydrolase.
    
 0.999
PV08_07195
WD_REPEATS_REGION domain-containing protein.
    
 0.998
PV08_00223
Polyubiquitin.
    
 0.958
PV08_10350
Ubiquitin-40S ribosomal protein S27a.
    
  0.893
PV08_11376
BZIP domain-containing protein.
    
  0.893
PV08_01917
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
 
      0.889
PV08_01919
Protein kinase domain-containing protein.
 
      0.885
PV08_01684
AAA domain-containing protein.
   
 0.865
PV08_03454
WD_REPEATS_REGION domain-containing protein.
  
 0.859
PV08_01930
DDHD domain-containing protein.
 
    
 0.859
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.