STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV08_07166GH16 domain-containing protein. (407 aa)    
Predicted Functional Partners:
PV08_03393
Uncharacterized protein.
   
 0.950
PV08_01555
RRM domain-containing protein.
   
 0.902
PV08_06772
Branchpoint-bridging protein.
   
 
 0.894
PV08_01628
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.882
PV08_10313
SF3b1 domain-containing protein.
   
 
 0.880
PV08_08876
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 
 0.870
PV08_11208
Uncharacterized protein.
   
 
 0.860
PV08_03840
ATP-dependent RNA helicase sub2.
   
 0.856
PV08_00121
Small nuclear ribonucleoprotein G.
   
   0.854
PV08_08904
Uncharacterized protein.
   
 
 0.853
Your Current Organism:
Exophiala spinifera
NCBI taxonomy Id: 91928
Other names: ATCC 18218, CBS 899.68, DUKE 3342, E. spinifera, NCMH 152, NCPF 2358, Phialophora spinifera, Rhinocladiella spinifera
Server load: low (20%) [HD]