Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_15003Uncharacterized protein. (61 aa)    
Predicted Functional Partners:
WDR3
WD repeat-containing protein 3.
   
  0.714
Noc2l
Nucleolar complex protein 2-like protein.
   
 0.622
Rpf2
Ribosome production factor 2-like protein.
   
   0.619
T06_12153
Pumilio domain-containing protein-like protein.
   
 
 0.618
Ftsj3
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 
 0.600
noc4l
Nucleolar complex protein 4-like protein.
   
  0.599
nop14
Putative nucleolar complex protein 14.
   
 0.598
NAT10
N-acetyltransferase 10.
   
 0.598
bms1
Ribosome biogenesis protein bms1.
   
  0.595
nol10
Nucleolar protein 10.
   
  0.595
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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