Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_16859Uncharacterized protein. (67 aa)    
Predicted Functional Partners:
UBA2
Protein HIRA.
    
 0.837
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.835
asf1
Histone chaperone asf1.
    
 0.743
HHIPL1
HHIP-like protein 1.
   
 0.700
Map3k9
Mitogen-activated protein kinase kinase kinase 10.
   
 0.699
CSK
Tyrosine-protein kinase.
   
 0.699
Tnni3k
Serine/threonine-protein kinase TNNI3K.
   
 0.699
sem-5
Sex muscle abnormal protein 5.
    
 0.698
KDM6A
Lysine-specific demethylase 6A.
   
 0.671
TYMS
Thymidylate synthase.
    
 0.665
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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