Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_2113Uncharacterized protein. (65 aa)    
Predicted Functional Partners:
birc5.2
Baculoviral IAP repeat-containing protein 5.2.
    
 0.756
Cdc73
Parafibromin.
   
 0.714
RTF1
RNA polymerase-associated protein RTF1-like protein.
    
 0.702
CD109
Antigen-like protein.
    
  0.605
ctr9
RNA polymerase-associated protein CTR9-like protein.
    
 0.600
T06_4005
Uncharacterized protein.
    
 0.600
cyn-7
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.539
BCL2
Apoptosis regulator Bcl-2.
     
  0.538
porin
Voltage-dependent anion-selective channel.
     
  0.538
SLC25A4
ADP/ATP translocase 1; Belongs to the mitochondrial carrier (TC 2.A.29) family.
     
  0.538
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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