Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
PGBD3-5PiggyBac transposable element-derived protein 3. (162 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.788
Ercc8
DNA excision repair protein ERCC-8.
    
 0.784
RpII215
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.748
FANCM
Fanconi anemia group M protein.
    
 0.747
Rpb4
DNA-directed RNA polymerase II 16 kDa polypeptide.
    
 0.746
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.744
ERCC5
DNA repair protein.
   
 0.742
Polr2g
DNA-directed RNA polymerase II subunit RPB7.
    
 0.727
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
   
 0.727
rpb-10
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
  0.722
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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