Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_16317Uncharacterized protein. (101 aa)    
Predicted Functional Partners:
T06_6067
Uncharacterized protein.
    
 0.925
tbp-1
TATA-box-binding protein.
    
 0.854
Tbpl1
TATA box-binding protein-like protein 1.
    
 0.854
T06_8879
Uncharacterized protein.
    
 0.830
T06_3202
Uncharacterized protein.
    
 0.830
T06_2936
RRN7-type domain-containing protein.
    
 0.830
T06_8344
Uncharacterized protein.
    
 0.830
T06_9343
RRN7-type domain-containing protein.
    
 0.830
CCDC101
SAGA-associated factor 29-like protein.
     
  0.790
RRN3
RNA polymerase I-specific transcription initiation factor RRN3.
    
 0.756
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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