Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tf2-9Transposon Tf2-9 polyprotein. (621 aa)    
Predicted Functional Partners:
Polg
DNA polymerase subunit gamma-1.
     
  0.606
REV3L
DNA polymerase zeta catalytic subunit.
     
  0.606
Pole3
DNA polymerase epsilon subunit 3.
     
  0.606
Pole3-2
DNA polymerase epsilon subunit 3.
     
  0.606
POLE
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
     
  0.606
Prim2-2
DNA primase large subunit.
     
  0.606
T06_16530
DNA polymerase.
     
  0.606
POLA2
DNA polymerase alpha subunit B.
     
  0.606
POLA1
DNA polymerase alpha catalytic subunit.
     
  0.606
TY3B-G-8
Transposon Ty3-G Gag-Pol polyprotein.
     
  0.577
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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