Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_2959CCHC-type domain-containing protein. (669 aa)    
Predicted Functional Partners:
Taf12
Transcription initiation factor TFIID subunit 12.
    
 0.898
TAF13
Transcription initiation factor TFIID subunit 13.
    
 0.897
taf6
Transcription initiation factor TFIID subunit 6.
    
 0.896
TAF5
Transcription initiation factor TFIID subunit 5.
    
 0.896
TAF1
Transcription initiation factor TFIID subunit 1.
    
 0.894
TAF4B
Transcription initiation factor TFIID subunit 4.
    
 0.894
TAF8
Transcription initiation factor TFIID subunit 8.
    
 0.890
taf2
Tetraspanin; Belongs to the tetraspanin (TM4SF) family.
    
 0.864
Taf7
Transcription initiation factor TFIID subunit 7.
    
 0.856
ttb-1
Transcription initiation factor IIB.
    
 0.828
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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