Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_16818Uncharacterized protein. (562 aa)    
Predicted Functional Partners:
T06_10484
Uncharacterized protein.
  
     0.487
T06_670
Integrase catalytic domain-containing protein.
  
     0.484
T06_11142
Integrase catalytic domain-containing protein.
  
     0.483
T06_12179
Integrase catalytic domain-containing protein.
  
     0.481
T06_13750
Integrase catalytic domain-containing protein.
  
     0.480
T06_9833
Uncharacterized protein.
  
     0.477
T06_13891
Uncharacterized protein.
  
     0.477
T06_10571
Uncharacterized protein.
  
     0.477
T06_3110
Integrase catalytic domain-containing protein.
  
     0.472
T06_8393
Integrase catalytic domain-containing protein.
  
     0.472
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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