Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Zw10Centromere/kinetochore protein zw10-like protein. (699 aa)    
Predicted Functional Partners:
NBAS
Neuroblastoma-amplified sequence.
   
 0.903
stx18
Syntaxin-18.
    
 0.875
Use1
Vesicle transport protein USE1.
    
 0.867
ARCN1
Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
 0.860
RPS6KA
Ribosomal protein S6 kinase 2 alpha.
    
 0.860
COPA
Coatomer subunit alpha.
    
 0.855
Zw10-3
Centromere/kinetochore protein zw10-like protein.
     
  0.815
Copb2
Coatomer subunit beta.
   
 0.794
COPE
Coatomer subunit epsilon.
    
 0.765
SEC22B
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
    
 0.759
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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