Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DNASE2-22Deoxyribonuclease-2-alpha. (297 aa)    
Predicted Functional Partners:
CATB
Cathepsin B-like cysteine proteinase; Belongs to the peptidase C1 family.
   
 
  0.487
CTSZ
Cathepsin Z; Belongs to the peptidase C1 family.
   
 
  0.487
cpr-3-2
Cathepsin B-like cysteine proteinase 3; Belongs to the peptidase C1 family.
   
 
  0.487
bloc1s1
Biogenesis of lysosome-related organelles complex 1 subunit 1.
   
 
  0.477
Sulf1
Extracellular sulfatase Sulf-1.
    
 0.461
AP1S2
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
  0.454
SH3GL1
Endophilin-A2.
     
  0.454
AP1M1
AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.
     
  0.452
Clta
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
     
  0.448
Ap2b1
AP complex subunit beta.
     
  0.445
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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