Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Os9Protein OS-9. (524 aa)    
Predicted Functional Partners:
mrps-5
Protein sel-1-like protein 1.
   
 0.984
SYVN1
E3 ubiquitin-protein ligase synoviolin B.
   
 0.969
DERL2
Derlin-2.
   
 0.952
hsp-3
Heat shock 70 kDa protein C.
   
 0.946
UBE2J1
Ubiquitin-conjugating enzyme E2 J1.
   
 0.945
cup-2
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.944
faf2-b
FAS-associated factor 2-B.
   
 0.933
TER94
Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.
    
 0.922
SPATA5
Spermatogenesis-associated protein 5.
    
 0.922
T06_2949
Uncharacterized protein.
   
 0.920
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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