Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rpl-660S ribosomal protein L6. (96 aa)    
Predicted Functional Partners:
rps30a
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.999
RpL5
60S ribosomal protein L5.
  
 0.996
rpl-17
60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
  
 0.996
RpL32
60S ribosomal protein L32.
  
 0.996
RPL27A
60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
  
 0.996
rpl-7
60S ribosomal protein L7.
  
 0.996
RPL28
60S ribosomal protein L28.
   
 0.996
rpl11
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.996
Rpl34
60S ribosomal protein L34.
  
 0.996
RpL19
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.996
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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