Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NLE1Notchless-like protein 1. (2015 aa)    
Predicted Functional Partners:
pro-1
Pre-rRNA-processing protein pro-1.
   
 0.994
GTPBP4
Nucleolar GTP-binding protein 1.
   
 
 0.990
nst-1
Guanine nucleotide-binding protein-like 3-like protein.
   
 
 0.988
Rpf2
Ribosome production factor 2-like protein.
   
 
 0.987
SDAD1
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
 
 0.987
NSA2
Ribosome biogenesis protein NSA2-like protein.
   
 
 0.984
T06_10088
Ribosome biogenesis protein WDR12-like protein.
  
0.981
T06_14943
Uncharacterized protein.
   
 
 0.980
rrbs-1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.979
RSL1D1
Ribosomal L1 domain-containing protein 1.
   
 
 0.976
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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