Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UbcPolyubiquitin-C. (614 aa)    
Predicted Functional Partners:
trip12
E3 ubiquitin-protein ligase TRIP12.
   
 0.959
RpL40
Ubiquitin-60S ribosomal protein L40.
   
 0.935
UBA52
Ubiquitin-60S ribosomal protein L40.
   
 0.935
Gak
Cyclin-G-associated kinase.
    
 0.930
UBA1
Ubiquitin-like modifier-activating enzyme 1; Belongs to the ubiquitin-activating E1 family.
   
 0.927
Ube2l3
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.925
UBXN7
UBX domain-containing protein 7.
    
 0.923
UBB
Polyubiquitin-B.
    
  0.922
let-70
Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.910
RPS6
40S ribosomal protein S6.
   
 0.908
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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