Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gfm2Ribosome-releasing factor 2, mitochondrial. (908 aa)    
Predicted Functional Partners:
ICT1
Peptidyl-tRNA hydrolase ICT1, mitochondrial.
  
 
 0.857
rplT
50S ribosomal protein L20.
  
 
 0.820
MRPL12
39S ribosomal protein L12, mitochondrial.
   
 
 0.806
MRPS30
28S ribosomal protein S30, mitochondrial.
    
 
 0.785
mrpl-19
Putative 39S ribosomal protein L19, mitochondrial.
  
 
 0.784
yars
Tyrosine--tRNA ligase.
  
  
 0.783
RpL13A
60S ribosomal protein L13a.
  
   0.782
T20F5.3
Putative ribosome-recycling factor, mitochondrial.
   
  
 0.765
MRPS18A
28S ribosomal protein S18a, mitochondrial.
    
 
 0.755
Mrpl17
39S ribosomal protein L17, mitochondrial.
  
   0.754
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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