Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SBDSRibosome maturation protein SBDS. (76 aa)    
Predicted Functional Partners:
EFTUD1
Elongation factor Tu GTP-binding domain-containing protein 1.
  
 
 0.976
eIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
  
 
 0.947
T06_14943
Uncharacterized protein.
   
 0.946
T06_10088
Ribosome biogenesis protein WDR12-like protein.
   
 
 0.887
NSA2
Ribosome biogenesis protein NSA2-like protein.
   
 0.884
rpl-7
60S ribosomal protein L7.
   
 0.865
nip7
60S ribosome subunit biogenesis protein NIP7-like protein.
   
 0.858
RpL5
60S ribosomal protein L5.
   
 
 0.851
rpl11
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.847
RPL3
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.819
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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