Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CebpgCCAAT/enhancer-binding protein gamma. (98 aa)    
Predicted Functional Partners:
cco-2
Cytochrome c oxidase subunit 5A, mitochondrial.
   
 0.913
COX5B
Cytochrome c oxidase subunit 5B, mitochondrial.
   
 0.904
COX4I1
Mitochondrial cytochrome c oxidase subunit.
   
 0.893
COX6B-2
Cytochrome c oxidase subunit 6b-2.
   
 0.884
T06_11319
BZIP domain-containing protein.
    
 0.880
T06_69
Uncharacterized protein.
    
 0.795
kay
Transcription factor kayak.
    
 0.795
Uqcrb
Cytochrome b-c1 complex subunit 7.
   
 0.792
Uqcrc2
Cytochrome b-c1 complex subunit 2, mitochondrial.
   
 0.763
RUNX1
Runt-related transcription factor 1.
    
 0.758
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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