Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_1770Uncharacterized protein. (831 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.944
KDM6A
Lysine-specific demethylase 6A.
    
 0.910
unc-10
Rab-3-interacting molecule unc-10.
    
 0.910
Tonsl
Tonsoku-like protein.
   
 0.903
unc-79
Uncoordinated protein 79.
    
 0.845
EGF1
Fibropellin-1.
    
 0.786
Apaf1
Apoptotic protease-activating factor 1.
    
 0.757
T06_10875
Elongation factor 1-gamma.
    
 0.751
RBBP5
Retinoblastoma-binding protein 5.
    
 0.739
ASH2L
Set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 0.739
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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