STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Higd2aHIG1 domain family member 2A. (111 aa)    
Predicted Functional Partners:
COX5B
Cytochrome c oxidase subunit 5B, mitochondrial.
   
 
 0.978
COX6B-2
Cytochrome c oxidase subunit 6b-2.
   
 
 0.924
PMPCB
Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.
   
 
 0.876
COI
Cytochrome c oxidase subunit.
    
 
 0.735
lamtor2
Ragulator complex protein LAMTOR2.
   
    0.644
Uqcrc2
Cytochrome b-c1 complex subunit 2, mitochondrial.
   
 
 0.633
cco-2
Cytochrome c oxidase subunit 5A, mitochondrial.
   
  
 0.629
NUDT9-4
Mitochondrial-processing peptidase subunit alpha.
    
 
 0.575
Ndufa8
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
   
    0.574
T06_6429
Succinate dehydrogenase assembly factor 2, mitochondrial; Plays an essential role in the assembly of succinate dehydrogenase (SDH), an enzyme complex (also referred to as respiratory complex II) that is a component of both the tricarboxylic acid (TCA) cycle and the mitochondrial electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit of the SDH catalytic dimer.
   
  
 0.564
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.