Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
seltSelenoprotein T. (211 aa)    
Predicted Functional Partners:
TfIIA-S
Protein YIPF.
      
 0.706
EEFSEC
Selenocysteine-specific elongation factor.
      
 0.694
msrB
Peptide-methionine (R)-S-oxide reductase; Methionine-sulfoxide reductase that specifically reduces methionine (R)-sulfoxide back to methionine. While in many cases methionine oxidation is the result of random oxidation following oxidative stress, methionine oxidation is also a post-translational modification that takes place on specific residues.
      
 0.679
SelD
Selenide, water dikinase.
      
 0.676
sepsecs
O-phosphoseryl-tRNA(Sec) selenium transferase.
      
 0.633
ooc-5
Torsin.
   
   0.626
TXNRD1
Thioredoxin reductase 1, cytoplasmic; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
      
 0.505
Txnrd2
Thioredoxin reductase 2, mitochondrial.
      
 0.505
cept1
Choline/ethanolaminephosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      
 0.476
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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