Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRD2Bromodomain-containing protein 2. (1153 aa)    
Predicted Functional Partners:
Taf7
Transcription initiation factor TFIID subunit 7.
    
 0.986
TAF1
Transcription initiation factor TFIID subunit 1.
    
 0.985
ANKLE2
DNA methyltransferase 1-associated protein 1.
    
 0.985
ruvbl2
DNA helicase; Belongs to the RuvB family.
    
 0.984
RUVBL1
DNA helicase; Belongs to the RuvB family.
    
 0.978
T06_4066
Uncharacterized protein.
   
 0.976
CDK9
Cyclin-dependent kinase 9.
    
 0.970
CFDP1
Craniofacial development protein 1.
    
 0.969
taf6
Transcription initiation factor TFIID subunit 6.
    
 0.963
Znhit1
Zinc finger HIT domain-containing protein 1.
    
 0.960
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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