Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GATA6Transcription factor-like protein. (781 aa)    
Predicted Functional Partners:
bs
Serum response factor-like protein.
    
 0.971
RUNX1
Runt-related transcription factor 1.
    
 0.942
rho-1
Ras-like GTP-binding protein rhoA.
   
 0.894
tbx20
T-box transcription factor TBX20.
   
 0.886
TBX3
T-box transcription factor.
    
 0.880
lmo3
LIM domain only protein 3.
    
 0.871
foxa2-a
Forkhead box protein A2-A.
    
 0.859
lhx9
LIM/homeobox protein Lhx9.
    
 0.859
Fhl2
Four and a half LIM domains protein 2.
    
 0.847
GATA3
GATA-binding factor 3.
   
 0.845
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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